John's Will names wife Mary.
The case for the marriage of a Mary Bryan to John Lee does not appear to be reliably sourced. Source [8] Family Records in the profile is a Family Data Collection - Individual Records, so just someone's family tree.
When Mary's profile was created, her identity was Mary Lee, daughter of John Lee-1662 and Mary Bryan-269. She was subsequently made the wife of John Lee-1662 and merged into Mary Bryan-269. All unsourced from Ancestry trees! But anyway, her identity was Mary, wife of John Lee.
She was subsequently attached as daughter of the Bryans.
So if it is decided John Lee did not marry a Mary Bryan, then her identity should be preserved by:
1) Changing her last name at birth to Unknown.
2) Moving any reliably sourced facts for a Mary Bryan, daughter of the Bryans, to a new profile attached to them.
3) Revising Mary Unknown's profile to include a research note for the "disputed" last name Bryan and revising the profile Biography to reflect what is reliably sourced.
US Southern Colonies Project will make her profile project managed based on disputed relationships.