An upvote for Chase's question. WikiTree absolutely needs a way to organize references and citations. I've also used a <span class=hidden></span> system on some of my profiles because after many years we still have no better option. And it's as much about creating proper, thorough reference lists as it is decluttering text in the biographical narrative.
As one example, see what is in production use at Wikipedia to accomplish both creation and separation of fully-qualified references from body text, as well as short, repeatable (and with different page numbers) inline citations. I've used their Harvard citation template on scores of Wikipedia pages.
Often overlooked in many G2G discussions about the subject is that there is a clear distinction, in most style systems, between a citation and a reference. Even WikiTree's own "Sources Style Guide" directly implies that we should be using both shortened, inline citations in addition to a section of fully-qualified references (note, though, that the Help page uses terminology at odds with most major style systems (e.g., Chicago Manual of Style, 17th Edition, items 14.1 through 14.67; MLA Handbook, 8th Edition, distinction between "works-cited list and in-text citations").
In scientific publications, the readers are typically expected to have the basic background knowledge necessary to understand why a work was listed in the references. In that regard, genealogy is more like a humanities publication...which is reasonable because our subject is really history. Many references are unique and require context and explanation, or in some cases a bit of transcription or interpretation. That's why Elizabeth Shown Mills in Evidence Explained--which on the WikiTree "Sources Style Guide" is stated to be the preferred method--writes that references have two purposes:
- To record the specific location of each piece of data; and
- To record details that affect the use or evaluation of that data
Accomplishing the second purpose using WikiText inline citations only is, in many instances, impractical to say the least. I even had the profile of one of my 3rd great-grandfathers edited in a complete makeover to remove my fully-qualified, detailed references and replace them with nothing but linked one-liners. The reason given by the Project Coordinator who did it was the citations were way too long and they cluttered the text in the biography. By that thinking, even a copied FamilySearch citation to a 1900 U.S. Census enumeration is too long and causes too much clutter.
Currently, without the use of correctly formed <span> tags, we have no way to create a comprehensive reference list to which shortened inline citations can link. I agree with Chase that, until WikiTree presents a solution, correctly formed <span> tags should be removed from the Suggestions list in order to help prevent exactly what occurred on the profile of that 3rd great-grandfather: a well-meaning soul deciding to "fix" what he or she deemed to be an error and undoing a lot of valid work in the attempt.